The oldest evidence of water buffalo discovered in the Philippines is multiple fragmentary skeletal remains recovered from the upper layers of the Neolithic Nagsabaran site, part of the Lal-lo and Gattaran Shell Middens (~2200 BCE to 400 CE) of northern Luzon. Most of the remains consisted of skull fragments, almost all of which have cut marks indicating they were butchered. The remains are associated with red slipped pottery, spindle whorls, stone adzes, and jade bracelets; which have strong affinities to similar artifacts from Neolithic Austronesian archeological sites in Taiwan. Based on the radiocarbon date of the layer in which the oldest fragments were found, water buffalo were first introduced to the Philippines by at least 500 BCE.

Carabaos are widely distributed in all the larger islands of the Philippines. Carabao hide was once used extensively to create a variety of products, including the armor of precolonial Philippine warriors.